Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs1940947 | chr18:5240031 | C/A | 9.06E-5 | 210 | 9.05 | 12.43 | 3.48 | KM Plot |
| BLCA | rs1940948 | chr18:5240111 | C/A | 4.41E-5 | 208 | 9.07 | 12.57 | 3.48 | KM Plot |
| BLCA | rs200817681 | chr16:20684132 | TAA/T | 0.000101 | 211 | 9.1 | 12.78 | 5.93 | KM Plot |
| BLCA | rs2010993 | chr15:84780973 | A/G | 1.26E-5 | 216 | 3 | 9.8 | 9.47 | KM Plot |
| BLCA | rs2015176 | chr10:126553531 | G/A | 0.000138 | 213 | 8.47 | 12.83 | 6.3 | KM Plot |
| BLCA | rs202202358 | chr11:65091768 | T/TTTC | 8.11E-9 | 214 | 8.87 | 12.7 | 4.22 | KM Plot |
| BLCA | rs2073059 | chr11:34477876 | C/G | 8.81E-6 | 216 | 4.33 | 8.47 | 10.13 | KM Plot |
| BLCA | rs2075756 | chr7:100466441 | G/A | 1.15E-5 | 213 | 12 | 9.25 | 4.2 | KM Plot |
| BLCA | rs2200494 | chr8:50822226 | A/G | 2.44E-5 | 216 | 10.13 | 9.25 | 1.87 | KM Plot |
| BLCA | rs2202522 | chr18:5263882 | C/T | 8.6E-10 | 212 | 8.7 | 13.33 | 4.85 | KM Plot |
| BLCA | rs2276130 | chr11:117973704 | A/G | 1.84E-10 | 216 | 10.1 | 7.18 | 2.27 | KM Plot |
| BLCA | rs2278887 | chr15:40847008 | C/T | 0.000161 | 214 | 10.68 | 6.57 | 2.27 | KM Plot |
| BLCA | rs2289916 | chr2:233641886 | C/T | 2.26E-10 | 216 | 9.43 | 10.72 | 0 | KM Plot |
| BLCA | rs2304579 | chr15:40991153 | A/G | 6.76E-6 | 216 | 10.6 | 8.25 | 3.98 | KM Plot |
| BLCA | rs2305740 | chr19:18180236 | A/G | 2.73E-5 | 216 | 8.67 | 16.02 | 4.63 | KM Plot |